Last updated: 2022-08-24

Checks: 2 0

Knit directory: RatXcan_Training/

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File Version Author Date Message
Rmd 982e545 sabrina-mi 2022-08-23 add predictability, heritability figures
html 982e545 sabrina-mi 2022-08-23 add predictability, heritability figures
Rmd 3bdf28a sabrina-mi 2022-08-22 fix link
Rmd 28edc16 sabrina-mi 2022-08-22 add link and change titles
html 28edc16 sabrina-mi 2022-08-22 add link and change titles
Rmd 3902557 sabrina-mi 2022-08-22 add analyze predixcan result
html 3902557 sabrina-mi 2022-08-22 add analyze predixcan result
Rmd 552c837 sabrina-mi 2022-08-20 add links
html 552c837 sabrina-mi 2022-08-20 add links
html 9a4f47a sabrina-mi 2022-08-19 new index
Rmd d57f3ae sabrina-mi 2022-08-19 retrying index html
html d57f3ae sabrina-mi 2022-08-19 retrying index html
Rmd a04720a sabrina-mi 2022-08-19 add links to website
html a04720a sabrina-mi 2022-08-19 add links to website
Rmd 97b4b7f sabrina-mi 2022-07-11 initialize project
html 97b4b7f sabrina-mi 2022-07-11 initialize project

Summary of RatXcan Pipeline:

  1. Train PredictDB models for each rat tissue
  2. Run PrediXcan on rat genotypes
  3. Analyze PrediXcan results
  4. Predict rat traits with PTRS
  5. Compare PTRS performance in rats and humans
  6. Estimate heritability and sparsity of rat genes with GEMMA (BSLMM)
  7. Compare gene predictability and heritability between human and rat genes